CESSHIV-1 database

General information on HIV-1 isolate

# 2985

Accession number	DQ287284
Name	C49_6_1999
Subtype	B
Country	Australia
Sampling year	1999
Patient	C49

DQ287284 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

acgggggagt ggcgagccct cagatgctgc atataagcag ctgctttctg cctgtactgg gtctctctgg ttggaccaga tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

DQ287273(#2976) DQ287275(#2978) DQ287277(#2824) DQ287278(#2980) DQ287279(#3140) DQ287281(#2982)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy