CESSHIV-1 database

General information on HIV-1 isolate

# 2988

Accession number	DQ287287
Name	C49_3_2004
Subtype	B
Country	Australia
Sampling year	2004
Patient	C49

DQ287287 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt g-cgagccctc agatgctgca tataagcagc tgctttctgc ctgtactggg tctctctggt tagaccagat ctgagcctgg gagctctctg gctagctagg gaacccactg cttaagcctc aataaagctt gccttgagtg cttcaagtag tgt

Isolates with identical sequences of region:

DQ287286(#2987)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy