CESSHIV-1 database

General information on HIV-1 isolate

# 3303

Accession number	DQ287291
Name	C54_9_1996
Subtype	B
Country	Australia
Sampling year	1996
Patient	C54

DQ287291 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagg ggcgagccct cagatgctgc atataagcag ctgctttctg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

DQ287288(#3474) DQ287289(#3293) DQ287290(#3302) DQ287292(#3304) DQ287293(#3305) DQ287294(#3306)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy