CESSHIV-1 database

General information on HIV-1 isolate

# 571

Accession number	DQ295194
Name	04WK7-HIV-1 wk
Subtype	B
Country	South Korea
Sampling year	2004
Patient	WK(JWK)

DQ295194 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc ataaaagcag ccgctttttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gctttaagta gtgt

Isolates with identical sequences of region:

EU047648(#1874) EU047649(#1845)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy