CESSHIV-1 database

General information on HIV-1 isolate

# 2998

Accession number	DQ848359
Name	mb8
Subtype	B
Country	USA
Sampling year	1990
Patient	B-mother

DQ848359 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttctg cctgtactgg gtccctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag g-aacccactg cttaagcctc aataaagctt gccttgagtg ctttaagtag tgt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy