CESSHIV-1 database

General information on HIV-1 isolate

# 3006

Accession number	DQ848361
Name	mb10
Subtype	B
Country	USA
Sampling year	1990
Patient	B-mother

DQ848361 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttctg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag g-aacccactg cttaagcctc aataaagctt gccttgagtg ctttaagtag tgt

Isolates with identical sequences of region:

DQ848354(#2971) DQ848355(#2995) DQ848356(#2996) DQ848357(#2997) DQ848358(#2825)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy