CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3733
Accession number DQ848378
Name ib16
SubtypeB
CountryUSA
Sampling year 1990
PatientB-child

DQ848378 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actaaggagt ggcaagccct cagatgctgc gtataagcag ctactttctg cctgtactaa gtctctctag ttagaccaga tctgagccta agagctctct agctaactaa agaacccact gcttaagcct caataaagct tgccttaagt gctttaagta atgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy