CESSHIV-1 database

General information on HIV-1 isolate

# 3117

Accession number	DQ848405
Name	ic2
Subtype	B
Country	USA
Sampling year	1990
Patient	C-child

DQ848405 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctctag ctagaccaga tctgagcctg ggagctctct ggctgactag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

DQ848404(#3116) DQ848406(#3118) DQ848407(#3119) DQ848408(#3120) DQ848409(#3121) DQ848422(#3010)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy