CESSHIV-1 database

General information on HIV-1 isolate

# 3648

Accession number	DQ848482
Name	ie6
Subtype	B
Country	USA
Sampling year	1990
Patient	E-child

DQ848482 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctgactag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

AF102215(#3583) D10112(#76) U73096(#2523) U80533(#2552) U81458(#2563) U81460(#2565)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy