CESSHIV-1 database

General information on HIV-1 isolate

# 3658

Accession number	DQ848492
Name	mg1
Subtype	B
Country	USA
Sampling year	1990
Patient	G-mother

DQ848492 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc ataaaagcag ctgctctttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

DQ848493(#3659) DQ848494(#3660) DQ848496(#3662) DQ848497(#3663) DQ848498(#3664) DQ848500(#3666) DQ848501(#3667) DQ848502(#3668) DQ848503(#3669)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy