CESSHIV-1 database

General information on HIV-1 isolate

# 3670

Accession number	DQ848504
Name	ig1
Subtype	B
Country	USA
Sampling year	1990
Patient	G-child

DQ848504 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgatgc ataaaagcag ctgctctttg cctgtactgg gtctctctgg ttagaccaga tctgagcccg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

DQ848505(#3671) DQ848506(#3672) DQ848507(#3673) DQ848508(#3674) DQ848509(#3675) DQ848511(#3677)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy