CESSHIV-1 database

General information on HIV-1 isolate

# 3016

Accession number	EF178613
Name	D24
Subtype	C
Country	India
Submitted to NCBI	2006

EF178613 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggg-agtg gctaaccctc agatgctgca tataagcagc tgcttttcgc ctgtactggg tctctctagg tagaccagat ccgagcccgg gagctctctg gctatctggg gaacccactg cttaagcctc aataaagctt gccttgagtg ctctgagcag tgt

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy