CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2224
Accession number EF192591
Name CU98_26
Subtype01B
CountryThailand
Submitted to NCBI 2006
PatientCU98_26

EF192591 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actgggggag tggcaaaccc tcagatgctg cataaaagca gccgcttttc gcccgttctg ggtctctctt gttagaccag gt-tgagcccg ggagctctct ggctagcaag ggaacccact gcttaaagcc tcaataaagc ttgccttgag tgcttaaagt ggtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012