CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3177
Accession number EF370253
Name 02CWS12c_2695s
SubtypeB
CountrySouth Korea
Sampling year 2002
PatientCWS

EF370253 isolate has foldings of [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgaaccct cagatgctgc ataaaagcag ccgctttttg cctgtactgg gtctctctgg ttagaccaga tccgagcctg ggagctctct ggctgactag ggaacccact gcttaagcct caataaagct tgccttgagt gctttaagta gtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy