CESSHIV-1 database

General information on HIV-1 isolate

# 2246

Accession number	EF370262
Name	95KYR5b_2634s2
Subtype	B
Country	South Korea
Sampling year	1995
Patient	KYR

EF370262 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgaaccct cagatgctgc ataaaagcag ctgctctttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctagctag ggaacccact gcttaagcct caataaagct tgccttgagt gctttaagta gtgt

Isolates with identical sequences of region:

EF370261(#2244) EF370265(#2247) EF370268(#1737)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy