CESSHIV-1 database

General information on HIV-1 isolate

# 1789

Accession number	EF370373
Name	03LGS2_2265
Subtype	B
Country	South Korea
Sampling year	2003
Patient	LGS

EF370373 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc ataaaagcag ctgctttttg cctgtactgg gtctctctgg ttagaccaga tcagagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gctttaagta gtgt

Isolates with identical sequences of region:

EF370313(#1761)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy