CESSHIV-1 database

General information on HIV-1 isolate

# 3017

Accession number	EF370379
Name	02JDH8_2363s
Subtype	B
Country	South Korea
Sampling year	2002
Patient	JDH

EF370379 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

acaggggagt ggcgagccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctagctag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

AB480694(#2719) U21135(#29)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy