CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2266
Accession number EF380388
Name 120415
SubtypeG
CountrySpain (Cameroon)
Submitted to NCBI 2007

EF380388 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gtcggggagt ggctaaccct cagatgctgc atataagcag ccgcttttcg cctgtactgg gtctctcttg ctagaccaga tttgagcctg ggagctctct ggctagtgga ggaacccact gcttaagcct caataaaagc ttgccttgag tgcttcaagt agtgt

Isolates with identical sequences of region:

EF380385(#2264) EF380386(#2265) EF380391(#2268)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012