CESSHIV-1 database

General information on HIV-1 isolate

# 1821

Accession number	EU047619
Name	96HSH7_3296
Subtype	B Korean
Country	South Korea
Sampling year	1996
Patient	HSH(KR39)

EU047619 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggtgagccct cagatgctgc ataaaagcag ctgctttctg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

EU047615(#1817) EU047620(#1625) EU047621(#1823) EU047623(#1825) EU047624(#1826) EU047625(#1827)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy