CESSHIV-1 database

General information on HIV-1 isolate

# 1882

Accession number	EU047686
Name	06LSang8_3103
Subtype	B Korean
Country	South Korea
Sampling year	2006
Patient	LSang

EU047686 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

accggggagt ggcaaaccct cagatgctgc ataaaagcag ctgctttctg cctgtactgg gtctctctgg ttagaccaga tcagagcctg ggagctctct ggctagctag ggaacccact gcttaagcct caataaagct tgccttgagt gctataagta gtgt

Isolates with identical sequences of region:

EF370339(#1778)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy