CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3441
Accession number EU835831
Name mnp41
SubtypeC
CountryIndia
Submitted to NCBI 2008
Patientmnp41

EU835831 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

tctggg-agtg gtcaaccctc agatgctgca nagtaagcag ctgctttttg cctgtactgg gtctctcttg ttggaccaga ggtgatcctg ggagcactct ggctacctgg ggaaccctct gattaagcct caataaagct tgccctttgt gctctgagca gtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012