CESSHIV-1 database

General information on HIV-1 isolate

# 2405

Accession number	FJ614994
Name	04HAS1_4193
Subtype	CRF02_AG
Country	South Korea
Sampling year	2004
Patient	HAS

FJ614994 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctagccct cagaagctgc atataagcag ccgcttctcg cctgtactgg gtctctcttg ctagaccaga tctgagcctg ggagctctct gactagcagg ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

FJ614995(#2406) FJ614997(#2408) FJ614998(#2409) FJ614999(#2410) FJ615000(#2411)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy