CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3057
Accession number GQ215490
Name NII_PGI_IND_VTE22
SubtypeB
CountryIndia
Sampling year 2008

GQ215490 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataaagca gctg-tttttg cctgtactgg gcctctctgg t-agaccagat ctgagcctgg gagctctctg gctaactagg gaaccccctg cttccgcctc aataaagctt gccttgagtg cttccagtag tgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012