CESSHIV-1 database

General information on HIV-1 isolate

# 3309

Accession number	GU595151
Name	59211
Subtype	BF1
Country	Italy
Sampling year	2002

GU595151 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgacccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctctag gtagaccaga tccgascctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gctacaagta gtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy