CESSHIV-1 database

General information on HIV-1 isolate

# 3297

Accession number	HM067748
Name	nx2
Subtype	CRF08_BC
Country	China
Sampling year	2006

HM067748 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggg-agtg gtcaaccctc agatgctgca tataagcagc tgctttgcgc ctgtaccggg tctct-tagtt agaccagatc tgagcctggg agctctctgg ctagctagg-a acccactgct taagcctcaa taaagcttgc cttgagtgct ctgagcagtg t

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy