CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3856
Accession number HM583616
Name Vin16
SubtypeA1
CountryUkraine
Sampling year 2009

HM583616 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctaaccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctctgg ttagaccaga tc-gagcctgg gagctctctg gctagctagg gaacccactg cttaagcctc aataaagctt gcct-gagtgc ttgaagtagt gt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012