CESSHIV-1 database

General information on HIV-1 isolate

# 3876

Accession number	HM583636
Name	Vin62
Subtype	A1
Country	Ukraine
Sampling year	2009

HM583636 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctaaccct cagatgctgc atataagcag ctgcttttcg cctgtactgg gtctctctgg ttagaccaga tc-gagcctgg gagctctctg gctagctagg gaacccactg cttaagcctc aataaagctt gccttgagtg ctttaagtag tgt

Isolates with identical sequences of region:

EU938085(#2281) EU938086(#2282) EU938094(#2290) EU938095(#2291) EU938098(#2294) EU938099(#2295) EU938102(#2298) EU938104(#2300) EU938107(#2303) EU938109(#2305) EU938115(#2311) EU938122(#2318) EU938123(#2319) HM583610(#3850) HM583624(#3864)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy