CESSHIV-1 database

General information on HIV-1 isolate

# 3005

Accession number	L28843
Name	1B11
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	1

L28843 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctcttg ttagaccaga tccgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

L28842(#2377) L28845(#2379) L28846(#2414) L28851(#2419) L28852(#2420) L28855(#2423) L28856(#2424)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy