CESSHIV-1 database

General information on HIV-1 isolate

# 2440

Accession number	L28872
Name	2B3
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	2

L28872 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actagggagt ggcgaaccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

L28869(#2437) L28870(#2438) L28871(#2439) L28873(#2441)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy