CESSHIV-1 database

General information on HIV-1 isolate

# 3778

Accession number	M58223
Name	L6_08
Subtype	B
Country	France
Sampling year	1989
Patient	P1

M58223 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctctgg ttagaccaga tccgagcctg ggagctctct ggctagctag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

M58219(#3774) M58222(#3777) M58224(#3779) M58225(#3780) M58227(#3782) M58229(#3784) M58230(#3785) M58233(#3788) M58235(#3790) M58254(#3809) M58255(#3810) M58257(#3812) M58258(#3813) M58261(#3816) M58262(#3817) M58263(#3818) M58264(#3819) M58265(#3820) M58268(#3823) M58271(#3826)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy