CESSHIV-1 database

General information on HIV-1 isolate

# 3801

Accession number	M58246
Name	V2_11
Subtype	B
Country	France
Sampling year	1986
Patient	P1

M58246 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaaccag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy