CESSHIV-1 database

General information on HIV-1 isolate

# 3835

Accession number	M58280
Name	V6_16
Subtype	B
Country	France
Sampling year	1989
Patient	P1

M58280 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgcnttttg cctgtactgg gtctctctgg ttagaccaga tccgagcctg ggagctctct ggctagctag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

M58218(#3773) M58220(#3775) M58232(#3787) M58273(#3828) M58276(#3831) M58277(#3832) M58278(#3833) M58279(#3834) M58281(#3836) M58282(#3837)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy