CESSHIV-1 database

General information on HIV-1 isolate

# 3075

Accession number	U63536
Name	Kond, TYGE1
Subtype	C
Country	South Africa
Sampling year	1990
Patient	Kond

U63536 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actagggagt ggtcaaccct cagatgctgc atataagcag ctgcttttcg cctgtactgg gtctctctag gtagaccaga tctgagcctg ggagctctct ggctatctag ggaacccact gcttaagcct caataaagct tgccttgagc gcttcaagta gtgt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy