CESSHIV-1 database

General information on HIV-1 isolate

# 2522

Accession number	U73094
Name	TW358_1
Subtype	B
Country	Taiwan
Submitted to NCBI	1996

U73094 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt gggcagccct cagatgctgc atgtaagcag ctgctttttg cctgtacggg gtctctctag ttagaccaga tctgagcctg ggagctctct ggctagctag ggaacccact gcttaagcct caataaagct tgccttgagt gcttgcaagt agtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy