CESSHIV-1 database

General information on HIV-1 isolate

# 2577

Accession number	U81472
Name	VE19NEF
Subtype	B
Country	Venezuela
Sampling year	1995
Patient	19

U81472 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttctg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gctttaagta gtgt

Isolates with identical sequences of region:

DQ848365(#3079) DQ848368(#3082) DQ848377(#3091) DQ848379(#3092) DQ848380(#3093) DQ848383(#3096) DQ848385(#3098) DQ848386(#3099) U80532(#2551)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy