CESSHIV-1 database

General information on HIV-1 isolate

# 275

Accession number	AB098332
Name	pUG029-A3
Subtype	A1
Country	Uganda
Sampling year	1992
Patient	UG029

AB098332 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tcttgttaga ccagata-gag tctgggaact ctctggctag cgagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgt

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy