CESSHIV-1 database

General information on HIV-1 isolate

# 797

Accession number	AB253674
Name	pJPDR3730AE15
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	NH2000-001

AB253674 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct ttc-gcttgta ctgggtctct cttgttagac caggtc-gagc ccgggagctc tctggctagc aggggaaccc actgcttaag cctcaataaa gcttgccttg agtgcttaaa gtggtgt

Isolates with identical sequences of region:

AB253636(#759) AB253673(#796) AB253675(#798) AB253677(#800)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy