CESSHIV-1 database

General information on HIV-1 isolate

# 872

Accession number	AB253694
Name	pJPDR1236AEC33
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	1236

AB253694 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tttcgcttgt actgggtctc tcttgttaga ccaggtc-gag cccgggagct ctctggctag caggggaacc cactgcttaa agcctcaata aagcttgcct tgagtgctta aagtggtgt

Isolates with identical sequences of region:

AB032740(#120) AB052611(#1067) AB253423(#906) AB253681(#859) AB253688(#866) AB253690(#868) AB253698(#876) AB253703(#881) AB253705(#883) AB253706(#884) AB253709(#887) AB253711(#889) AB253712(#890) AB253713(#891) AB253716(#894) U51188(#369)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy