CESSHIV-1 database

General information on HIV-1 isolate

# 892

Accession number	AB253714
Name	pJPDR2192AE49
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	NH19-203

AB253714 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tttcgcttgt actgggtctc tcttgttaga ccaggtc-gag cccgggagct ctctggctag caagggaacc cactgcttaa agcctcaata aagcttgcct tgagtgccta aagtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy