CESSHIV-1 database

General information on HIV-1 isolate

# 940

Accession number	AB286850
Name	p04JPDR5782C39
Subtype	CU
Country	Japan
Sampling year	2004
Patient	5782

AB286850 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcttgt actgggtctc tctagttgga ccagatctga gcctgggagc tctctggcta actggggaac ccactgctta agcctcaata aagcttgcct tgagtgctct gagcagtgt

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy