CESSHIV-1 database

General information on HIV-1 isolate

# 2724

Accession number	AB485644
Name	DJ259
Subtype	C
Country	Djibouti
Submitted to NCBI	2009
Patient	DJ259

AB485644 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcttgt actgggtctc tctgggtaga ccagatctga gcctgggagc tctctggcta tctagggaac ccactgctta agcctcaata aagcttgcct tgagtgctct aagtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy