CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2816
Accession number AF102199
Name ET2222
SubtypeC
CountryEthiopia
Submitted to NCBI 1998
PatientETH2222

AF102199 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgcc tttcgcttgt actgggtctc tctaggtaga ccagatctga gcctgggagc tctctggcta tctggggaac ccactgctta agcctcaata aagtttgcct tgagtgcttc aagtagtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy