CESSHIV-1 database

General information on HIV-1 isolate

# 3578

Accession number	AF102208
Name	SO5594
Subtype	AC
Country	Somalia
Submitted to NCBI	1998
Patient	5594

AF102208 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcttgt actaggtctc tcttgttaga ccagata-gag cctaggagct ctctggctag cgaaggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy