CESSHIV-1 database

General information on HIV-1 isolate

# 3587

Accession number	AF102219
Name	UG5609
Subtype	D
Country	Uganda
Submitted to NCBI	1998
Patient	UG5609

AF102219 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tcttgttaga ccagat-tgag cccgagagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy