CESSHIV-1 database

General information on HIV-1 isolate

# 3589

Accession number	AF102222
Name	UG6083
Subtype	D
Country	Uganda
Submitted to NCBI	1998
Patient	UG6083

AF102222 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tct-gcctgta ctgggtctct cttgttggac cagat-tgagc ccgggagctc tctggctagc gagggaaccc actgcttaag cctcaataaa gcttgccttg agtgcttcaa gtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy