CESSHIV-1 database

General information on HIV-1 isolate

# 1396

Accession number	AF170545
Name	94TH702
Subtype	CRF01_AE
Country	Thailand
Sampling year	1994

AF170545 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagc-gctt ttcgcttgta cgtggtctct cttgttagac caggtc-gagc ccgggagctc tctggctggc aagggaaccc actgcttaaa gcctcaataa agcttgcctt gagtgcttaa agtggtgt

Isolates with identical sequences of region:

AF170546(#1397) AF170547(#1398)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy