CESSHIV-1 database

General information on HIV-1 isolate

# 1290

Accession number	AF196719
Name	92SU64
Subtype	B
Country	Suriname
Sampling year	1992

AF196719 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct ttt-gcctgta ctgggtctct ctggttagac cagatctgag cctgggagct ctctggcta-c tagggaaccc actgcttaag cctcaataaa gcttgccttg agtgctttaa gtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy