CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3308
Accession number AJ237579
Name 97NOGIL4
SubtypeA1DHK
CountryNorway
Sampling year 1997
PatientNOGIL4

AJ237579 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctggttgga ccagatctga gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

AJ237566(#1530)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012