CESSHIV-1 database

General information on HIV-1 isolate

# 1414

Accession number	AJ300450
Name	SE42HALD
Subtype	Group O
Country	Senegal
Sampling year	1998

AJ300450 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct taccgcttgt accgggtctc ggttagagaa ccaggtctga gcccgggagc tccctggcct ctagctgaac ccgctgctta acgctcaata aagcttgcct tgagtgag--aa gcagtgt

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy