CESSHIV-1 database

General information on HIV-1 isolate

# 395

Accession number	AJ320484
Name	92UG001
Subtype	D
Country	Uganda
Sampling year	1992
Patient	ARP177.1 9

AJ320484 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttttgcctgt actgggtctc tctggttaga ccagatttga gcctgagagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AF196723(#1293) M22639(#8)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy